Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs61801242 | chr1:161729700 | A/G | 6.96E-5 | 405 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs61801244 | chr1:161732119 | A/C | 7.83E-5 | 403 | 16.17 | 16.38 | 4.3 | KM Plot |
| HNSC | rs61801245 | chr1:161732306 | C/T | 7.83E-5 | 403 | 16.17 | 16.38 | 4.3 | KM Plot |
| HNSC | rs61827869 | chr1:173770042 | C/G | 1.23E-6 | 408 | 16.97 | 15.2 | 5.1 | KM Plot |
| HNSC | rs622967 | chr6:74344171 | G/A | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs635750 | chr6:74344816 | T/A | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs635752 | chr6:74344817 | T/A | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs636605 | chr6:74344976 | C/T | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs6490292 | chr12:120923685 | G/A | 1.38E-5 | 408 | 16.23 | 17.37 | 6.23 | KM Plot |
| HNSC | rs6519297 | chr22:42349847 | G/A | 4.71E-5 | 407 | 16.3 | 17.1 | 9.62 | KM Plot |
| HNSC | rs6593780 | chr1:146914587 | G/A | 3.02E-6 | 412 | 17.07 | 13.67 | 3.6 | KM Plot |
| HNSC | rs66467176 | chr1:224640147 | T/C | 1.42E-6 | 410 | 16.35 | 18.13 | 13.43 | KM Plot |
| HNSC | rs670244 | chr5:4935006 | C/G | 5.55E-16 | 412 | 17.1 | 13.8 | 2.98 | KM Plot |
| HNSC | rs67571923 | chr20:44425795 | C/T | 2.34E-7 | 407 | 16.43 | 14.22 | 9.13 | KM Plot |
| HNSC | rs67637399 | chr22:46666912 | T/TA | 8.31E-5 | 408 | 16.4 | 16.5 | 11.7 | KM Plot |